Basic Information
Locus ID:
Pt_Chr0601340
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 32584432 | 32585670 | + | Pt_Chr0601340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 44,103.63 Da | 57.40 | 107.57 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 16 | 63 | 1.65784E-18 | - |
| Pfam | PF04564 | U-box domain | 12 | 87 | 2.5E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 110 | 378 | 2.84E-20 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 9 | 87 | 3.4E-26 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 108 | 391 | 1.3E-18 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 91 | 1.4E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 15 | 84 | 2.1E-28 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 276 | 319 | 9.7474 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 11 | 91 | 35.313801 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_051226502.1 | E3 ubiquitin-protein ligase PUB23-like [Lolium perenne] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7PWN6 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology