Basic Information
Locus ID:
Pt_Chr0601260
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 29927447 | 29930692 | + | Pt_Chr0601260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 37,287.02 Da | 62.41 | 85.42 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 108 | 187 | 9.67151E-17 | - |
| Pfam | PF00651 | BTB/POZ domain | 113 | 200 | 4.2E-15 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 113 | 200 | 2.04E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 104 | 245 | 5.9E-20 | IPR011333 |
| SMART | SM00225 | BTB_4 | 105 | 204 | 1.9E-10 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 102 | 172 | 14.625219 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 96 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61600.1 | POZ/BTB containin G-protein 1. POZ/BTB containing-protein AtPOB1 | 0 |
| RefSeq | XP_047046366.1 | BTB/POZ domain-containing protein At2g46260-like [Lolium rigidum] | 0 |
| Q9FPW6 | BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana OX=3702 GN=POB1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6KNF6 | BTB domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0505040.2 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0601260 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G574600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG052500, gene_TRIDC5BG056710 |
| Poaceae | Triticum aestivum | 2 | TraesCS5B02G361200.1, TraesCS5D02G368300.1 |