Basic Information
Locus ID:
Pt_Chr0601224
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 29003741 | 29016988 | + | Pt_Chr0601224 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 166,655.06 Da | 41.25 | 94.25 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 540 | 661 | 1.18622E-15 | IPR038005 |
| Pfam | PF00069 | Protein kinase domain | 32 | 300 | 8.3E-50 | IPR000719 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 323 | 423 | 9.7E-13 | IPR000535 |
| Pfam | PF00931 | NB-ARC domain | 801 | 921 | 2.4E-10 | IPR002182 |
| Pfam | PF00931 | NB-ARC domain | 718 | 800 | 4.6E-11 | IPR002182 |
| Pfam | PF18052 | Rx N-terminal domain | 541 | 620 | 9.0E-11 | IPR041118 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 681 | 934 | 1.08E-47 | IPR027417 |
| SUPERFAMILY | SSF49354 | PapD-like | 313 | 444 | 1.39E-16 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 18 | 301 | 4.37E-67 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 1002 | 1393 | 2.55E-26 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 920 | 1016 | 2.2E-14 | IPR036388 |
| Gene3D | G3DSA:1.20.5.4130 | - | 540 | 661 | 4.0E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1050 | 1416 | 4.4E-29 | IPR032675 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 318 | 439 | 6.9E-19 | IPR013783 |
| Gene3D | G3DSA:1.10.8.430 | - | 834 | 919 | 4.5E-11 | IPR042197 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 126 | 317 | 5.8E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 13 | 103 | 8.0E-23 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 675 | 827 | 1.4E-18 | IPR027417 |
| SMART | SM00220 | serkin_6 | 32 | 303 | 3.9E-34 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 322 | 439 | 16.220459 | IPR000535 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 32 | 317 | 36.131462 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 167 | 179 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 38 | 59 | - | IPR017441 |
| PRINTS | PR00364 | Disease resistance protein signature | 1130 | 1146 | 3.7E-10 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 723 | 738 | 3.7E-10 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 871 | 885 | 3.7E-10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 463 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00970.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 41. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_044366834.1 | disease resistance protein RGA5-like [Triticum aestivum] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SIC7 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000240 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G117800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0601224 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G885000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3BG085690, gene_TRIDC3BG085710 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3B02G593500.1, TraesCS3B02G611100.1 ... |