Basic Information
Locus ID:
Pt_Chr0601129
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 26571059 | 26574410 | + | Pt_Chr0601129 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 62,636.93 Da | 50.11 | 73.80 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 285 | 544 | 1.13117E-41 | - |
| Pfam | PF08662 | Eukaryotic translation initiation factor eIF2A | 403 | 544 | 2.9E-5 | IPR013979 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 220 | 545 | 1.79E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 207 | 546 | 9.5E-121 | IPR015943 |
| SMART | SM00320 | WD40_4 | 334 | 371 | 5.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 505 | 544 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 375 | 414 | 8.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 462 | 502 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 331 | 0.27 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 459 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 288 | 160.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 382 | 423 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 512 | 545 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 424 | 468 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 512 | 545 | 11.391954 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 382 | 414 | 10.521959 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 531 | 545 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_051228748.1 | protein FIZZY-RELATED 3 [Lolium perenne] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0Q3GL00 | ANAPC4_WD40 domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100839910 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology