Basic Information
Locus ID:
Pt_Chr0601124
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 26150893 | 26151327 | + | Pt_Chr0601124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 16,639.80 Da | 39.87 | 80.56 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 47 | 119 | 1.7E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 31 | 130 | 3.26E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 14 | 143 | 5.7E-15 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 46 | 121 | 2.3E-9 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 45 | 125 | 11.588178 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051220656.1 | uncharacterized protein LOC127338668 [Lolium perenne] | 0 |
| TrEMBL | M8BIV4 | 28 kDa ribonucleoprotein, chloroplastic OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology