Basic Information
Locus ID:
Pt_Chr0601116
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 25904699 | 25905910 | - | Pt_Chr0601116 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 43,135.34 Da | 64.84 | 56.80 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 205 | 247 | 1.33349E-23 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 284 | 390 | 5.8E-40 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 13 | 47 | 6.0E-13 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 205 | 247 | 2.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 187 | 254 | 1.08E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 173 | 254 | 1.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 206 | 246 | 1.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 206 | 247 | 12.474524 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 278 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_020186507.1 | probable E3 ubiquitin-protein ligase RHC2A [Aegilops tauschii subsp. strangulata] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A453GWD2 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology