Basic Information
Locus ID:
Pt_Chr0601054
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 24024883 | 24028674 | + | Pt_Chr0601054 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 135,450.44 Da | 52.76 | 54.85 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 1181 | 1222 | 0.00855596 | - |
| CDD | cd05162 | PWWP | 83 | 171 | 6.97145E-24 | - |
| Pfam | PF00855 | PWWP domain | 83 | 174 | 8.8E-12 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 76 | 184 | 1.5E-18 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 71 | 145 | 5.4E-16 | - |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 85 | 148 | 10.998353 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 842 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 960 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1024 | 1050 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1001 | 1068 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 781 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 742 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 876 | 899 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 521 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 944 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1081 | 1144 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_051228607.1 | PWWP domain-containing protein 3-like isoform X2 [Lolium perenne] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | I1HVV3 | PWWP domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g62680v3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology