Basic Information
Locus ID:
Pt_Chr0601042
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 23848566 | 23852548 | + | Pt_Chr0601042 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 57,298.57 Da | 43.97 | 83.22 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 164 | 203 | 6.43464E-5 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 314 | 502 | 1.05E-18 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 162 | 204 | 1.7E-5 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 376 | 508 | 7.6E-19 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 155 | 208 | 2.9E-7 | IPR036779 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 512 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65600.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_044384334.1 | probable L-type lectin-domain containing receptor kinase S.7 [Triticum aestivum] | 0 |
| Q8H8C7 | Chitin elicitor-binding protein OS=Oryza sativa subsp. japonica OX=39947 GN=CEBIP PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KUY6 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0538650.1, HORVU.MOREX.r3.6HG0538670.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016500, gene-QYE76_058420 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0202282, Pt_Chr0601036, Pt_Chr0601042 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG062990 |
| Poaceae | Triticum aestivum | 4 | TraesCS3B02G588200.1, TraesCS4B02G387600.1 ... |