Basic Information
Locus ID:
Pt_Chr0600906
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
CPK24
Description:
EF hand
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 21296237 | 21297432 | - | Pt_Chr0600906 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 29,088.09 Da | 41.46 | 89.49 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 196 | 236 | 1.93478E-6 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 2 | 145 | 1.3E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 161 | 9.57E-50 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 170 | 236 | 6.35E-11 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 163 | 185 | 1.1E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 162 | 1.6E-50 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 186 | 236 | 1.1E-16 | - |
| SMART | SM00220 | serkin_6 | 2 | 145 | 1.1E-11 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 145 | 32.23048 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 188 | 223 | 13.14653 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 201 | 213 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 7 | 19 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.3 | - | 0 |
| RefSeq | XP_047047093.1 | calcium-dependent protein kinase 22-like [Lolium rigidum] | 0 |
| Q69IM9 | Calcium-dependent protein kinase 22 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK22 PE=3 SV=1 | 0 | |
| TrEMBL | M8B3V1 | Calcium-dependent protein kinase 32 OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg58837 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012123 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004710, gene:ENSEOMG00000007423 ... |
| Apiaceae | Apium graveolens | 1 | Ag1G00766 |
| Brassicaceae | Brassica nigra | 1 | BniS02554g190.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036522 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.84, Contig80_1.3 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006613 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0600906 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G009170, Chr18G009200 |
| Poaceae | Zea mays | 1 | Zm00001eb351760_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47862 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g08160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1077 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18439 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5700 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-798 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606690 |
| Zosteraceae | Zostera marina | 2 | Zosma03g11280.v3.1, Zosma06g15170.v3.1 |