Basic Information
Locus ID:
Pt_Chr0600894
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 20910230 | 20911408 | - | Pt_Chr0600894 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 44,823.73 Da | 43.89 | 87.40 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 226 | 317 | 1.4E-6 | IPR013187 |
| Pfam | PF00646 | F-box domain | 9 | 46 | 1.0E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 48 | 1.15E-8 | IPR036047 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 58 | 365 | 2.35E-5 | IPR011047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 49 | 7.6E-6 | - |
| SMART | SM00256 | fbox_2 | 13 | 53 | 2.8E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 101 | 323 | 1.3E-18 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 56 | 10.398279 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051222201.1 | F-box protein At5g49610-like [Lolium perenne] | 0 |
| TrEMBL | A0A3B5ZZA5 | FBA_3 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology