Basic Information
Locus ID:
Pt_Chr0600882
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 20706017 | 20706394 | - | Pt_Chr0600882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.98 | 14,577.57 Da | 81.73 | 71.76 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 38 | 104 | 7.7E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 18 | 120 | 1.09E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 124 | 4.2E-11 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 36 | 110 | 1.3E-4 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051222197.1 | uncharacterized protein LOC127340494 [Lolium perenne] | 0 |
| TrEMBL | M8BSH2 | 31 kDa ribonucleoprotein, chloroplastic OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology