Basic Information
Locus ID:
Pt_Chr0600710
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 16431241 | 16437018 | - | Pt_Chr0600710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 54,413.67 Da | 57.09 | 72.31 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 367 | 398 | 0.031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 349 | 0.19 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 132 | 476 | 7.88E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 211 | 475 | 2.0E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 232 | 267 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 354 | 0.003 | IPR001680 |
| SMART | SM00320 | WD40_4 | 439 | 478 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 357 | 398 | 0.0088 | IPR001680 |
| SMART | SM00320 | WD40_4 | 118 | 155 | 360.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 120 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_051227977.1 | autophagy-related protein 18a [Lolium perenne] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6WVY7 | WD_REPEATS_REGION domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology