Basic Information
Locus ID:
Pt_Chr0600645
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 15083129 | 15087434 | + | Pt_Chr0600645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 37,108.86 Da | 58.42 | 58.40 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 73 | 149 | 8.2E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 203 | 246 | 8.0E-9 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 251 | 308 | 8.7E-25 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 140 | 197 | 2.48E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 251 | 3.76E-11 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 69 | 138 | 4.45E-17 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 185 | 270 | 1.1E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 274 | 315 | 1.6E-17 | - |
| SMART | SM00184 | ring_2 | 204 | 246 | 2.3E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 66 | 137 | 24.861828 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 204 | 247 | 11.987676 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 139 | 203 | 33.23344 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 332 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_047052693.1 | E3 ubiquitin-protein ligase MIEL1-like [Lolium rigidum] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6Y8N6 | RING finger and CHY zinc finger domain-containing protein 1 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology