Basic Information
Locus ID:
Pt_Chr0600546
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 12842957 | 12844739 | + | Pt_Chr0600546 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 39,641.79 Da | 48.01 | 79.16 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 324 | 364 | 2.9E-6 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 323 | 370 | 6.1E-9 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 114 | 227 | 1.44E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 37 | 92 | 4.25E-6 | IPR036047 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 103 | 300 | 1.5E-18 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 313 | 368 | 6.0E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 322 | 364 | 11.127352 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 37 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_044359157.1 | F-box protein At1g67340-like [Triticum aestivum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6H185 | MYND-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology