Basic Information
Locus ID:
Pt_Chr0600511
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 11645474 | 11651714 | + | Pt_Chr0600511 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 27,668.49 Da | 45.03 | 79.22 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 190 | 227 | 1.4E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 185 | 234 | 4.54E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 174 | 242 | 3.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 190 | 227 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 190 | 228 | 12.799091 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 205 | 214 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051221977.1 | probable histone acetyltransferase HAC-like 1 [Lolium perenne] | 0 |
| Q6YXY2 | Probable histone acetyltransferase HAC-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0137500 PE=3 SV=2 | 0 | |
| TrEMBL | A0A3B6FV33 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36108, jg8055 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6490 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028321 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26580, Sbi_jg33980 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15100 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011885 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005011, gene:ENSEOMG00000035979 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0009940, CQ.Regalona.r1.7BG0012110 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30014250 |
| Apiaceae | Apium graveolens | 3 | Ag10G00798, Ag4G01782, Ag7G00073 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G008590, COCNU_02G015890, scaffold138810G000020 |
| Arecaceae | Phoenix dactylifera | 6 | gene-LOC103697201, gene-LOC103706523, gene-LOC103710584 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.443.V1.1, AsparagusV1_09.1052.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G27683, Ftri10G33108, Ftri15G22394, Ftri9G33219 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G07200.1, AT5G48655.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004921m.g.v1.0, Thhalv10021611m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g19060.v2.2, Sp3g06150.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g056690.2N, BniB02g069710.2N, BniB04g005810.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G0038, Ceq07G0707 |
| Cymodoceaceae | Cymodocea nodosa | 4 | gene.Cymno04g02630, gene.Cymno05g02670, gene.Cymno07g09610 ... |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0009s00030.v1.0, Dusal.0462s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g08930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9763 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1597 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036463 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G23954, Lb5G28645, Lb5G28647 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.4325, BH02.4353, BH03.2641, CH02.4400, CH03.2848 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0044520, gene-QOZ80_1BG0094530 |
| Poaceae | Hordeum vulgare | 10 | HORVU.MOREX.r3.3HG0309940.1, HORVU.MOREX.r3.3HG0309960.1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_006451, gene-QYE76_018607, gene-QYE76_026282 ... |
| Poaceae | Oryza coarctata | 4 | Oco01G028450, Oco02G029550, Oco15G010370, Oco17G008730 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g69040.1, LOC_Os09g32690.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G232300, gene-BS78_03G382000 |
| Poaceae | Puccinellia tenuiflora | 9 | Pt_Chr0202939, Pt_Chr0202953, Pt_Chr0600509, Pt_Chr0600511 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G002560, Chr03G022810, Chr05G031870, Chr08G019220 ... |
| Poaceae | Thinopyrum elongatum | 8 | Tel3E01G675100, Tel3E01G676600, Tel3E01G677000 ... |
| Poaceae | Triticum dicoccoides | 18 | gene_TRIDC3AG060280, gene_TRIDC3AG060320 ... |
| Poaceae | Triticum aestivum | 30 | TraesCS3A02G425600.1, TraesCS3A02G425700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb102300_P004, Zm00001eb143350_P001 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30591, Zma_g9264 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1052, evm.TU.LG12.678, evm.TU.LG16.1664 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g05870, gene.Posoc05g04470, gene.Posoc05g08420 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1762, evm.TU.Scaffold_9_RagTag.1546 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-12258, nbisL1-mrna-20718, nbisL1-mrna-20776 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12181, nbisL1-mrna-1935 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10768, nbisL1-mrna-21529 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.976, evm.TU.utg000006l.1028 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009860, Maker00014112 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10562, nbisL1-mrna-22389 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15696, nbisL1-mrna-4543 |
| Salicaceae | Populus euphratica | 5 | populus_peu03778, populus_peu17920, populus_peu30888 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605685, gene-LOC132610062 |
| Solanaceae | Solanum chilense | 2 | SOLCI002926300, SOLCI004588000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021377, gene-LOC107029274 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.63_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0698, TC08G0924 |
| Zosteraceae | Zostera marina | 3 | Zosma03g15740.v3.1, Zosma05g14590.v3.1, Zosma05g15210.v3.1 |