Basic Information
Locus ID:
Pt_Chr0600503
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 11450524 | 11452913 | - | Pt_Chr0600503 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 11,183.51 Da | 60.74 | 69.90 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 20 | 92 | 2.63217E-49 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 21 | 91 | 4.6E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 98 | 1.9E-27 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 20 | 97 | 1.3E-38 | - |
| SMART | SM00213 | ubq_7 | 21 | 92 | 8.5E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 19 | 96 | 16.319872 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_047054806.1 | small ubiquitin-related modifier 1 [Lolium rigidum] | 0 |
| P55857 | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6WVP0 | Small ubiquitin-related modifier OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology