Basic Information
Locus ID:
Pt_Chr0600501
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 11436926 | 11437570 | - | Pt_Chr0600501 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 23,913.32 Da | 65.20 | 58.92 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 166 | 203 | 1.80908E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 164 | 209 | 2.9E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 210 | 3.3E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 214 | 2.3E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 166 | 203 | 1.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 166 | 204 | 10.969719 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 147 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_047056339.1 | uncharacterized protein LOC124662563 [Lolium rigidum] | 0 |
| TrEMBL | F2EHP4 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology