Basic Information
Locus ID:
Pt_Chr0600312
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 6828516 | 6835210 | - | Pt_Chr0600312 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 163,512.02 Da | 41.00 | 105.20 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 905 | 1192 | 3.23235E-79 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1215 | 1435 | 4.88047E-114 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 291 | 576 | 1.08237E-82 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 606 | 812 | 1.02287E-97 | - |
| Pfam | PF00005 | ABC transporter | 1234 | 1382 | 1.2E-27 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 634 | 764 | 1.9E-14 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 292 | 555 | 4.6E-19 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 910 | 1147 | 7.4E-24 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 276 | 576 | 6.54E-27 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 906 | 1198 | 2.35E-41 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 632 | 825 | 1.95E-49 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1207 | 1442 | 7.11E-63 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 242 | 589 | 4.0E-41 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 594 | 862 | 1.2E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1200 | 1454 | 1.1E-76 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 876 | 1198 | 1.2E-48 | IPR036640 |
| SMART | SM00382 | AAA_5 | 638 | 820 | 8.7E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1243 | 1436 | 4.7E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 606 | 835 | 19.854731 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1217 | 1451 | 16.560095 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 907 | 1146 | 32.435982 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 291 | 568 | 28.155931 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 737 | 751 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_047055696.1 | putative ABC transporter C family member 15 [Lolium rigidum] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6FTS8 | ABC transporter C family member 15 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology