Basic Information
Locus ID:
Pt_Chr0600304
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 6707564 | 6712380 | - | Pt_Chr0600304 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 43,596.99 Da | 48.30 | 95.22 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 44 | 310 | 7.4E-118 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 313 | 367 | 2.09E-8 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 45 | 310 | 2.27E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 71 | 371 | 1.9E-114 | IPR027417 |
| SMART | SM00382 | AAA_5 | 94 | 271 | 3.2E-8 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 41 | 366 | 1.6E-135 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 241 | 315 | 27.807577 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 72 | 233 | 36.60408 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 256 | 264 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 132 | 161 | 4.0E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 340 | 357 | 4.0E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 253 | 281 | 4.0E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 204 | 233 | 4.0E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 286 | 315 | 4.0E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 166 | 195 | 4.0E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 41 | 372 | 42.63443 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 397 | - | - |
| Coils | Coil | Coil | 351 | 371 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_044977882.1 | DNA repair protein recA homolog 3, mitochondrial [Hordeum vulgare subsp. vulgare] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | F2DQG8 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology