Basic Information
Locus ID:
Pt_Chr0600266
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 6025170 | 6031593 | + | Pt_Chr0600266 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 160,177.95 Da | 41.62 | 104.02 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1186 | 1406 | 2.45655E-114 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 289 | 574 | 6.65109E-83 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 604 | 810 | 3.07611E-97 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 903 | 1163 | 5.18897E-72 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 290 | 553 | 1.9E-19 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 915 | 1116 | 4.7E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 632 | 762 | 1.3E-14 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1205 | 1353 | 1.2E-27 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 274 | 574 | 3.79E-27 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 905 | 1169 | 4.58E-37 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 629 | 823 | 2.11E-49 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1178 | 1413 | 6.93E-63 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 240 | 587 | 3.0E-41 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 593 | 860 | 1.9E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1171 | 1425 | 1.1E-76 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 874 | 1169 | 1.7E-42 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1214 | 1407 | 4.7E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 636 | 818 | 9.0E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 905 | 1133 | 29.051491 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1188 | 1422 | 16.560095 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 604 | 833 | 19.881407 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 289 | 566 | 28.34227 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 735 | 749 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_047055696.1 | putative ABC transporter C family member 15 [Lolium rigidum] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6FTS8 | ABC transporter C family member 15 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology