Basic Information
Locus ID:
Pt_Chr0600034
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RIO1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 545613 | 549667 | - | Pt_Chr0600034 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 76,299.20 Da | 39.73 | 90.99 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 412 | 441 | 0.093 | IPR002885 |
| Pfam | PF00069 | Protein kinase domain | 550 | 625 | 7.1E-10 | IPR000719 |
| Pfam | PF01535 | PPR repeat | 147 | 173 | 0.013 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 232 | 258 | 0.02 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 306 | 332 | 0.0014 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 382 | 405 | 0.76 | IPR002885 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 478 | 638 | 1.75E-24 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 484 | 556 | 8.5E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 571 | 687 | 1.2E-33 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 109 | 280 | 4.6E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 281 | 385 | 1.1E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 386 | 446 | 6.0E-6 | IPR011990 |
| SMART | SM00220 | serkin_6 | 473 | 689 | 6.2E-4 | IPR000719 |
| TIGRFAM | TIGR03724 | arch_bud32: Kae1-associated kinase Bud32 | 479 | 684 | 6.0E-56 | IPR022495 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 306 | 341 | 2.6E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 147 | 178 | 2.8E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 411 | 443 | 8.1E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 303 | 339 | 8.527949 | IPR002885 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 473 | 690 | 13.474663 | IPR000719 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 144 | 178 | 10.292718 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 340 | 374 | 8.692369 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 409 | 443 | 10.632519 | IPR002885 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 597 | 609 | - | IPR008266 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26110.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_051227620.1 | pentatricopeptide repeat-containing protein At5g61370, mitochondrial isoform X2 [Lolium perenne] | 0 |
| Q9FLJ6 | Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61370 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453G2J0 | non-specific serine/threonine protein kinase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10484, jg35329 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12037 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000342 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119680 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg28893, Sbi_jg3047 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6855 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000912, GOSA_00000913 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11706, Sgl11866, Sgl16999 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005775, gene:ENSEOMG00000021230 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5BG0026580, CQ.Regalona.r1.8AG0003340 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30026860 |
| Apiaceae | Apium graveolens | 2 | Ag10G00718, Ag9G02125 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G001050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723805 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G09166 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G08120.1, AT5G26110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004885m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g21620.v2.2, Sp5g00290.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g008050.2N, BniB02g078430.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0319, Ceq06G2088 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2201 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00870 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g28580 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6313 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG06.1531, evm.TU.LG06.1534, evm.TU.LG06.1535 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007540, Pov_00007919 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G12749, Lb2G12789, Lb7G32702 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1882, BH01.2357, CH01.2442 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0124920 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0298190.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056849 |
| Poaceae | Oryza coarctata | 2 | Oco19G004500, Oco20G004470 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g28640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G230900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204288, Pt_Chr0600034 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G014020, Chr09G009420, Chr13G015650, Chr15G014820 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G616000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG055480, gene_TRIDC3BG061930 |
| Poaceae | Triticum aestivum | 2 | TraesCS3A02G389300.1, TraesCS3D02G380300.1 |
| Poaceae | Zea mays | 3 | Zm00001eb031460_P001, Zm00001eb222890_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-28003, nbis-gene-48004 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13266, Zma_g16062 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2329, evm.TU.LG14.1498 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g01890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1012 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11335, nbisL1-mrna-21273 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4219, nbisL1-mrna-7393 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18376, nbisL1-mrna-18377 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.513, evm.TU.utg000006l.320 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009242, Maker00014026 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9968 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5120, nbisL1-mrna-7632 |
| Salicaceae | Populus euphratica | 2 | populus_peu15071, populus_peu32736 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603538, gene-LOC132608020 |
| Solanaceae | Solanum chilense | 2 | SOLCI002233100, SOLCI002820300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021082, gene-LOC107027004 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1696 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0830, TC08G0858 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13720.v3.1 |