Basic Information
Locus ID:
Pt_Chr0505989
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 185694773 | 185699923 | - | Pt_Chr0505989 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 94,170.65 Da | 44.11 | 82.37 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 538 | 671 | 1.00767E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 540 | 670 | 4.1E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 693 | 735 | 8.3E-11 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 499 | 737 | 5.1E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 498 | 763 | 3.6E-96 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 672 | 757 | 3.6E-96 | - |
| SMART | SM00382 | AAA_5 | 536 | 673 | 8.2E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 643 | 662 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 731 | 804 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 731 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 229 | - | - |
| Coils | Coil | Coil | 725 | 752 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_047094612.1 | ATPase family protein 2 homolog [Lolium rigidum] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | I1HG30 | AAA domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100827769 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology