Basic Information
Locus ID:
Pt_Chr0505856
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 182391115 | 182405936 | - | Pt_Chr0505856 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 158,523.30 Da | 44.82 | 102.82 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18052 | Rx N-terminal domain | 13 | 93 | 3.7E-17 | IPR041118 |
| Pfam | PF00560 | Leucine Rich Repeat | 687 | 706 | 0.49 | IPR001611 |
| Pfam | PF00931 | NB-ARC domain | 175 | 415 | 5.1E-37 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 162 | 428 | 7.09E-51 | IPR027417 |
| SUPERFAMILY | SSF52047 | RNI-like | 1115 | 1336 | 1.18E-29 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 497 | 840 | 1.19E-49 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 747 | 1090 | 2.38E-30 | - |
| Gene3D | G3DSA:1.20.5.4130 | - | 13 | 116 | 6.7E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 728 | 1094 | 1.4E-45 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 327 | 413 | 2.1E-6 | IPR042197 |
| Gene3D | G3DSA:3.40.50.300 | - | 153 | 324 | 2.8E-29 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1118 | 1293 | 4.5E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 539 | 727 | 1.2E-34 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 414 | 509 | 3.0E-11 | IPR036388 |
| SMART | SM00367 | LRR_CC_2 | 660 | 683 | 360.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 783 | 810 | 38.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 684 | 711 | 22.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 827 | 852 | 10.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1296 | 1323 | 450.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1234 | 1261 | 140.0 | IPR006553 |
| SMART | SM00369 | LRR_typ_2 | 1163 | 1186 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 857 | 881 | 370.0 | IPR003591 |
| SMART | SM00367 | LRR_CC_2 | 881 | 908 | 590.0 | IPR006553 |
| SMART | SM00369 | LRR_typ_2 | 734 | 759 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 807 | 830 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1210 | 1234 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 684 | 708 | 340.0 | IPR003591 |
| PRINTS | PR00364 | Disease resistance protein signature | 266 | 280 | 1.0E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 362 | 376 | 1.0E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 879 | 895 | 1.0E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 195 | 210 | 1.0E-16 | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G58602.1 | LRR and NB-ARC domains-containing disease resistance protein. | 0 |
| RefSeq | XP_044447433.1 | putative disease resistance protein RGA1 [Triticum aestivum] | 0 |
| Q7XBQ9 | Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6A3H2 | P-loop containing nucleoside triphosphate hydrolase, leucine-rich repeat domain, L OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology