Basic Information
Locus ID:
Pt_Chr0505843
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 182007195 | 182019348 | + | Pt_Chr0505843 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 141,217.97 Da | 40.45 | 103.54 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 561 | 582 | 1.1 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 755 | 776 | 1.5 | IPR001611 |
| Pfam | PF00931 | NB-ARC domain | 172 | 413 | 2.2E-34 | IPR002182 |
| Pfam | PF18052 | Rx N-terminal domain | 13 | 93 | 2.6E-17 | IPR041118 |
| Pfam | PF13855 | Leucine rich repeat | 679 | 731 | 3.4E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 479 | 735 | 1.31E-36 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 161 | 426 | 1.61E-47 | IPR027417 |
| SUPERFAMILY | SSF52047 | RNI-like | 1011 | 1230 | 1.8E-26 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 671 | 956 | 3.74E-23 | - |
| Gene3D | G3DSA:1.20.5.4130 | - | 13 | 128 | 7.1E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1177 | 1249 | 2.5E-8 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 151 | 318 | 6.0E-30 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 741 | 988 | 2.6E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 522 | 738 | 8.4E-39 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 412 | 500 | 2.7E-10 | IPR036388 |
| Gene3D | G3DSA:1.10.8.430 | - | 325 | 411 | 2.9E-5 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 997 | 1176 | 7.9E-24 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 1058 | 1081 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1105 | 1129 | 96.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 702 | 725 | 3.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 560 | 582 | 84.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 752 | 776 | 160.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 754 | 776 | 7.196008 | IPR001611 |
| PRINTS | PR00364 | Disease resistance protein signature | 263 | 277 | 7.9E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 774 | 790 | 7.9E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 360 | 374 | 7.9E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 190 | 205 | 7.9E-18 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46730.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_044424974.1 | putative disease resistance protein RGA1 [Triticum aestivum] | 0 |
| Q7XBQ9 | Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5Z5L7 | Disease resistance protein RGA3 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology