Basic Information
Locus ID:
Pt_Chr0505370
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 169706042 | 169715577 | - | Pt_Chr0505370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 46,635.26 Da | 60.00 | 75.40 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 114 | 157 | 1.06819E-17 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 305 | 348 | 4.86045E-18 | - |
| Pfam | PF13639 | Ring finger domain | 114 | 157 | 7.7E-11 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 305 | 348 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 305 | 354 | 2.78E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 114 | 163 | 8.84E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 283 | 353 | 5.8E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 162 | 1.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 306 | 347 | 7.8E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 115 | 156 | 1.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 306 | 348 | 12.386007 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 115 | 157 | 12.267982 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 282 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35000.1 | RING/U-box superfamily protein. E3 ligase-like protein induced by chitin oligomers. | 0 |
| RefSeq | XP_047042654.1 | RING-H2 finger protein ATL17-like [Lolium rigidum] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | M8CII3 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology