Basic Information
Locus ID:
Pt_Chr0505332
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 168812263 | 168817655 | + | Pt_Chr0505332 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 56,279.51 Da | 41.35 | 83.45 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 423 | 486 | 3.94E-7 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 410 | 493 | 2.9E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 424 | 475 | 0.0023 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 443 | 478 | 8.913786 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 443 | 484 | 11.343905 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33340.3 | MOS4-associated complex 3B. Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity. | 0 |
| RefSeq | XP_047059002.1 | uncharacterized protein LOC124665651 [Lolium rigidum] | 0 |
| Q9AV81 | Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=PRP19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9U490 | Pre-mRNA-processing factor 19 OS=Eragrostis curvula OX=38414 GN=EJB05_34565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0101359, Pt_Chr0107667, Pt_Chr0501995, Pt_Chr0505332 |