Basic Information
Locus ID:
Pt_Chr0505088
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
FAD NAD(P)-binding oxidoreductase family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 161314917 | 161333320 | - | Pt_Chr0505088 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 161,273.92 Da | 47.00 | 74.78 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14704 | bZIP_HY5-like | 254 | 305 | 1.52908E-20 | - |
| Pfam | PF00890 | FAD binding domain | 1091 | 1155 | 3.3E-5 | IPR003953 |
| Pfam | PF00170 | bZIP transcription factor | 251 | 311 | 1.6E-11 | IPR004827 |
| Pfam | PF01494 | FAD binding domain | 978 | 1015 | 1.2E-5 | IPR002938 |
| SUPERFAMILY | SSF57959 | Leucine zipper domain | 253 | 311 | 7.74E-12 | - |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 976 | 1438 | 5.77E-38 | IPR036188 |
| Gene3D | G3DSA:1.20.5.170 | - | 252 | 312 | 8.6E-10 | - |
| Gene3D | G3DSA:3.50.50.60 | - | 1378 | 1441 | 2.5E-11 | IPR036188 |
| Gene3D | G3DSA:3.30.70.2700 | - | 831 | 917 | 5.6E-6 | - |
| Gene3D | G3DSA:3.50.50.60 | - | 968 | 1194 | 8.7E-77 | IPR036188 |
| SMART | SM00338 | brlzneu | 249 | 313 | 1.3E-14 | IPR004827 |
| ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 251 | 311 | 9.886681 | IPR004827 |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1145 | 1159 | 6.1E-6 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 978 | 1000 | 6.1E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| Coils | Coil | Coil | 262 | 296 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30720.1 | FAD/NAD(P)-binding oxidoreductase family protein. Encodes a putative oxidoreductase/electron carrier detected in the chloroplast stroma that is essential to ensure a correct electron flow through the photosynthetic chain and, hence, photosynthesis efficiency and normal growth. Mutations in the Col-0 allele result in pale green pigmentation and defective growth. | 0 |
| RefSeq | XP_047094139.1 | uncharacterized protein Cbei_0202-like [Lolium rigidum] | 0 |
| Q6AU90 | bZIP transcription factor 39 OS=Oryza sativa subsp. japonica OX=39947 GN=BZIP39 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6WUL5 | FAD_binding_3 domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4012 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10883 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014937 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g191510, BVRB_8g191520 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24767, Sbi_jg8631 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19974 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022294 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl42639, Sgl42650, Sgl47384 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009308, gene:ENSEOMG00000032281 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017100, CQ.Regalona.r1.8BG0018150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30264900 |
| Apiaceae | Apium graveolens | 1 | Ag2G00394 |
| Arecaceae | Cocos nucifera | 1 | scaffold000539G000050 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720589, gene-LOC120109602 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.23.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G24652 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G30720.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024548m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g28630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g084990.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2600 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2749 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g08610 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g24970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.346 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000788, Pov_00041633 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07324, Lb1G07325 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2457, BH05.2553, CH05.2649 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0373260, gene-QOZ80_5BG0420540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0065010.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013265 |
| Poaceae | Oryza coarctata | 1 | Oco09G009560 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g34040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G143700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505088, Pt_Chr0505228 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G009310, Chr22G008390 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G425900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG038550, gene_TRIDC1BG043750 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G258000.1, TraesCS1B02G268400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb288040_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13925 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27209 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2581, evm.TU.LG02.2582 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g18990 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.178 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13409 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21241 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16604 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.116 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015004 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16652 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14563 |
| Salicaceae | Populus euphratica | 1 | populus_peu05559 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602934 |
| Solanaceae | Solanum chilense | 1 | SOLCI004192200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026340 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8168 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1021 |
| Zosteraceae | Zostera marina | 1 | Zosma03g12780.v3.1 |