Basic Information
Locus ID:
Pt_Chr0504909
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 156607742 | 156623368 | - | Pt_Chr0504909 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 111,460.81 Da | 32.60 | 81.57 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 37 | 313 | 7.37965E-175 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 597 | 809 | 1.8E-51 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 354 | 442 | 2.5E-17 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 891 | 995 | 7.9E-9 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 38 | 349 | 4.9E-92 | IPR000602 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 26 | 350 | 3.71E-108 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 454 | 998 | 7.69E-145 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 353 | 444 | 9.48E-26 | IPR028995 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 37 | 317 | 1.6E-117 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 394 | 448 | 1.0E-19 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 878 | 999 | 8.6E-33 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 592 | 857 | 1.3E-100 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 318 | 393 | 3.9E-30 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 458 | 569 | 2.1E-25 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 354 | 424 | 2.5E-19 | IPR015341 |
| Coils | Coil | Coil | 938 | 958 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_051207664.1 | alpha-mannosidase [Lolium perenne] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | I1I2Y9 | Alpha-mannosidase OS=Brachypodium distachyon OX=15368 GN=100841651 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology