Basic Information
Locus ID:
Pt_Chr0504700
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 150113184 | 150121104 | + | Pt_Chr0504700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 158,648.58 Da | 49.97 | 85.28 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1256 | 1455 | 1.2E-59 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1125 | 1448 | 1.44E-72 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 119 | 537 | 2.81E-34 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1075 | 1335 | 1.1E-23 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 113 | 541 | 6.5E-45 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1337 | 1453 | 8.4E-33 | - |
| SMART | SM00119 | hect_3 | 1140 | 1455 | 1.2E-48 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1279 | 1455 | 49.251514 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 811 | 887 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 844 | 881 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 811 | 832 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 96 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_051206015.1 | E3 ubiquitin-protein ligase UPL4 [Lolium perenne] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B5ZYP8 | HECT-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology