Basic Information
Locus ID:
Pt_Chr0504683
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 149603810 | 149611798 | + | Pt_Chr0504683 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 161,737.20 Da | 49.01 | 84.58 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1227 | 1481 | 2.3E-63 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 121 | 539 | 3.96E-34 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1114 | 1474 | 1.23E-76 | IPR035983 |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 1304 | 1325 | 7.2E-11 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 113 | 543 | 1.0E-44 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1363 | 1479 | 1.3E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1075 | 1268 | 3.6E-19 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1326 | 1358 | 7.2E-11 | - |
| SMART | SM00119 | hect_3 | 1129 | 1481 | 1.2E-57 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1305 | 1481 | 49.251514 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 883 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 834 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 98 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_051206015.1 | E3 ubiquitin-protein ligase UPL4 [Lolium perenne] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B5Y335 | HECT-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology