Basic Information
Locus ID:
Pt_Chr0504671
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 149380457 | 149388163 | - | Pt_Chr0504671 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 55,047.50 Da | 49.68 | 78.51 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 347 | 496 | 2.61487E-82 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 16 | 109 | 1.4E-11 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 347 | 452 | 1.12E-10 | - |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 21 | 122 | 1.28E-5 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 401 | 498 | 1.2E-33 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 8 | 142 | 1.7E-29 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 335 | 400 | 2.7E-16 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 184 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_044980185.1 | AMSH-like ubiquitin thioesterase 3 [Hordeum vulgare subsp. vulgare] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8I6XLY5 | MPN domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology