Basic Information
Locus ID:
Pt_Chr0504555
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 145378623 | 145386096 | + | Pt_Chr0504555 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 34,161.40 Da | 52.96 | 73.72 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 3 | 107 | 1.02736E-44 | IPR000608 |
| CDD | cd02947 | TRX_family | 234 | 292 | 1.60566E-16 | - |
| Pfam | PF00085 | Thioredoxin | 238 | 289 | 3.6E-8 | IPR013766 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 5 | 67 | 1.9E-18 | IPR000608 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 179 | 294 | 1.35E-14 | IPR036249 |
| SUPERFAMILY | SSF54495 | UBC-like | 2 | 110 | 1.29E-38 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 68 | 113 | 1.1E-13 | IPR016135 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 217 | 295 | 4.0E-14 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 67 | 6.2E-29 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 112 | 4.0E-30 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 67 | 23.207497 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 181 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08690.1 | ubiquitin-conjugating enzyme 11. | 0 |
| RefSeq | XP_028078714.1 | ubiquitin-conjugating enzyme E2-17 kDa isoform X2 [Camellia sinensis] | 0 |
| P35135 | Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2YL76 | UBC core domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_012893 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Pt_Chr0504555.