Basic Information
Locus ID:
Pt_Chr0504525
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 144579811 | 144585223 | + | Pt_Chr0504525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 95,653.79 Da | 33.07 | 87.52 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 68 | 1.2E-5 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 721 | 823 | 4.4E-7 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 640 | 720 | 2.6E-14 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 618 | 830 | 2.97E-39 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 49 | 395 | 1.34E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 607 | 705 | 1.0E-34 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 706 | 836 | 5.4E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 192 | 387 | 4.7E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 191 | 1.2E-38 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 269 | 291 | 7.87367 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 635 | 888 | 11.764448 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 641 | 663 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79620.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_047094359.1 | leucine-rich repeat receptor protein kinase HPCA1-like [Lolium rigidum] | 0 |
| Q8GZ99 | Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1 | 0 | |
| TrEMBL | M0WQQ4 | Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology