Basic Information
Locus ID:
Pt_Chr0504475
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 143912572 | 143919402 | + | Pt_Chr0504475 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 141,560.61 Da | 41.72 | 106.81 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 411 | 611 | 8.13181E-108 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1032 | 1252 | 1.95406E-121 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 715 | 1009 | 5.65813E-74 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 105 | 385 | 3.28167E-75 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 717 | 961 | 9.0E-25 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 104 | 364 | 4.0E-19 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1051 | 1199 | 6.0E-28 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 429 | 563 | 1.1E-20 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 406 | 632 | 4.18E-59 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 94 | 385 | 5.89E-30 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 713 | 1016 | 1.31E-46 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1026 | 1264 | 2.76E-66 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 93 | 393 | 6.9E-44 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 680 | 1015 | 4.3E-53 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1017 | 1269 | 4.2E-79 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 394 | 644 | 1.9E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 438 | 611 | 7.8E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1060 | 1245 | 6.5E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 104 | 377 | 25.214466 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1036 | 1268 | 17.700546 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 411 | 634 | 23.256073 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 717 | 997 | 31.844648 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 536 | 550 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_051205214.1 | ABC transporter C family member 3-like [Lolium perenne] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A452ZEJ7 | ABC transporter C family member 3 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology