Basic Information
Locus ID:
Pt_Chr0504444
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 143150655 | 143160540 | - | Pt_Chr0504444 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 91,166.35 Da | 53.19 | 83.28 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00112 | Papain family cysteine protease | 224 | 317 | 1.3E-5 | IPR000668 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 731 | 768 | 1.2E-8 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 150 | 318 | 2.35E-14 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 720 | 772 | 1.02E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 184 | 335 | 7.0E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 693 | 792 | 9.0E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 483 | 562 | 1.7E-5 | IPR038718 |
| SMART | SM00184 | ring_2 | 731 | 769 | 5.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 731 | 768 | 10.48287 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 746 | 755 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_051226211.1 | helicase-like transcription factor CHR28 isoform X2 [Lolium perenne] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | M8AUV8 | Helicase-like transcription factor CHR28 OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology