Basic Information
Locus ID:
Pt_Chr0504440
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 142888357 | 142895189 | + | Pt_Chr0504440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 57,581.12 Da | 48.72 | 91.31 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 12 | 298 | 2.22704E-115 | - |
| CDD | cd00051 | EFh | 434 | 501 | 2.7924E-15 | IPR002048 |
| Pfam | PF13202 | EF hand | 401 | 417 | 0.019 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 81 | 299 | 4.7E-55 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 433 | 501 | 9.4E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 343 | 506 | 1.92E-33 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 6 | 313 | 2.02E-77 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 127 | 342 | 2.2E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 15 | 126 | 3.0E-16 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 343 | 510 | 2.6E-38 | - |
| SMART | SM00220 | serkin_6 | 13 | 299 | 8.7E-88 | IPR000719 |
| SMART | SM00054 | efh_1 | 475 | 503 | 1.9E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 397 | 425 | 1.7 | IPR002048 |
| SMART | SM00054 | efh_1 | 433 | 461 | 2.9E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 471 | 506 | 15.043417 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 429 | 464 | 13.174425 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 400 | 428 | 8.794848 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 13 | 299 | 46.548222 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 442 | 454 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 19 | 43 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 160 | 172 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 406 | 418 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 484 | 496 | - | IPR018247 |
| PRINTS | PR00450 | Recoverin family signature | 355 | 374 | 5.2E-10 | - |
| PRINTS | PR00450 | Recoverin family signature | 425 | 444 | 5.2E-10 | - |
| PRINTS | PR00450 | Recoverin family signature | 447 | 465 | 5.2E-10 | - |
| PRINTS | PR00450 | Recoverin family signature | 401 | 422 | 5.2E-10 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23580.1 | calmodulin-like domain protein kinase 9. unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2+ | 0 |
| RefSeq | XP_048543167.1 | calcium and calcium/calmodulin-dependent serine/threonine-protein kinase [Triticum urartu] | 0 |
| Q6AVM3 | Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Oryza sativa subsp. japonica OX=39947 GN=CCAMK PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5Z0M7 | Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168840 |
| Apiaceae | Apium graveolens | 1 | Ag3G02085 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G005670, COCNU_04G005700 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709055 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1301.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G25598 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1578 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1608 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1013 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006959, Pov_00014745 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1968, BH05.2092, CH05.2164 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0368830, gene-QOZ80_5BG0416380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0069960.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013966 |
| Poaceae | Oryza coarctata | 2 | Oco09G012740, Oco10G012820 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g41090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G240800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504440, Pt_Chr0504501 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G012590, Chr22G005170 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G495900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG045650, gene_TRIDC1BG051680 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G307200.1, TraesCS1B02G318000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb200350_P004, Zm00001eb306730_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25330 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28476 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g28890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1112 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6503 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20877 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21100 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.840 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017089 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11027, nbisL1-mrna-21129, nbisL1-mrna-21130 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13317 |
| Salicaceae | Populus euphratica | 2 | populus_peu06012, populus_peu19879 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645338 |
| Solanaceae | Solanum chilense | 1 | SOLCI001256100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028598 |