Basic Information
Locus ID:
Pt_Chr0504413
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 142416316 | 142425417 | + | Pt_Chr0504413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 142,373.70 Da | 41.54 | 107.59 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 105 | 392 | 2.86461E-81 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 418 | 618 | 5.44496E-108 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1039 | 1259 | 1.81368E-121 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 722 | 1016 | 8.2982E-74 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 724 | 968 | 9.1E-25 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 104 | 371 | 4.3E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 436 | 570 | 1.3E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1058 | 1206 | 6.1E-28 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 720 | 1023 | 1.31E-46 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1033 | 1271 | 2.76E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 95 | 399 | 2.35E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 413 | 639 | 6.5E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1024 | 1276 | 4.2E-79 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 401 | 651 | 3.0E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 687 | 1022 | 4.4E-53 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 93 | 400 | 4.5E-48 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1067 | 1252 | 6.5E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 445 | 618 | 7.8E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 104 | 384 | 30.333035 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 418 | 641 | 23.309427 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1043 | 1275 | 17.700546 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 724 | 1004 | 31.844648 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 543 | 557 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_051205214.1 | ABC transporter C family member 3-like [Lolium perenne] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A452ZEJ7 | ABC transporter C family member 3 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology