Basic Information
Locus ID:
Pt_Chr0504260
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 138245732 | 138249129 | - | Pt_Chr0504260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 64,697.13 Da | 45.39 | 63.76 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 22 | 152 | 1.13767E-44 | IPR033734 |
| CDD | cd09612 | Jacalin | 445 | 572 | 2.41072E-40 | IPR033734 |
| CDD | cd09612 | Jacalin | 255 | 385 | 1.79867E-41 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 442 | 572 | 2.3E-27 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 22 | 152 | 4.0E-30 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 255 | 385 | 7.6E-28 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 11 | 151 | 2.49E-42 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 432 | 571 | 1.23E-38 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 242 | 384 | 1.83E-39 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 425 | 572 | 3.1E-49 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 2 | 152 | 8.8E-54 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 235 | 385 | 1.6E-46 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 22 | 153 | 4.1E-38 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 442 | 573 | 5.7E-33 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 255 | 386 | 7.0E-34 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 431 | 573 | 45.899746 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 244 | 386 | 45.177547 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 11 | 153 | 48.966743 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_047094971.1 | jacalin-related lectin 3 isoform X2 [Lolium rigidum] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | I1HHU9 | Jacalin-related lectin 3 OS=Brachypodium distachyon OX=15368 GN=BRADI_2g20447v3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology