halophFGD

Basic Information

Locus ID: Pt_Chr0504147

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: Homeodomain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr05	135783356	135791274	-	Pt_Chr0504147

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.65	121,221.87 Da	58.81	58.65	-1.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00086	homeodomain	579	634	1.33554E-10	IPR001356
CDD	cd00086	homeodomain	908	961	4.25281E-11	IPR001356
CDD	cd15504	PHD_PRHA_like	227	279	7.59232E-28	-
Pfam	PF00628	PHD-finger	227	282	5.6E-11	IPR019787
Pfam	PF00046	Homeodomain	583	631	2.9E-7	IPR001356
Pfam	PF00046	Homeodomain	914	958	1.0E-8	IPR001356
SUPERFAMILY	SSF46689	Homeodomain-like	906	962	1.33E-10	IPR009057
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	217	285	2.08E-12	IPR011011
SUPERFAMILY	SSF46689	Homeodomain-like	573	634	2.01E-10	IPR009057
Gene3D	G3DSA:1.10.10.60	-	908	973	3.7E-12	-
Gene3D	G3DSA:1.10.10.60	-	577	646	1.6E-10	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	208	279	4.7E-12	IPR013083
SMART	SM00389	HOX_1	579	640	1.6E-9	IPR001356
SMART	SM00249	PHD_3	227	280	1.8E-10	IPR001965
SMART	SM00389	HOX_1	906	967	5.3E-10	IPR001356
ProSiteProfiles	PS50071	'Homeobox' domain profile.	903	963	13.750234	IPR001356
ProSiteProfiles	PS50016	Zinc finger PHD-type profile.	225	282	11.1187	IPR019787
ProSiteProfiles	PS50071	'Homeobox' domain profile.	576	636	13.879796	IPR001356
ProSitePatterns	PS00027	'Homeobox' domain signature.	938	961	-	IPR017970
ProSitePatterns	PS01359	Zinc finger PHD-type signature.	228	279	-	IPR019786
MobiDBLite	mobidb-lite	consensus disorder prediction	349	363	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	341	483	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	640	673	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	18	69	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	860	887	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	102	136	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	509	531	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	371	385	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	534	549	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	720	735	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	897	914	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	840	859	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1024	1070	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	636	914	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	496	587	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	18	44	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	763	779	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	386	402	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1024	1059	-	-
Coils	Coil	Coil	180	200	-	-

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific) GO:0003677 (DNA binding)

KEGG Pathway

KO Term:

K11657 (remodeling and spacing factor 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G19510.1	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain. Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains.
RefSeq	XP_047094452.1	homeobox protein HOX1A-like [Lolium rigidum]
Swiss-Prot	P46605	Homeobox protein HOX1A OS=Zea mays OX=4577 GN=HOX1A PE=2 SV=1
TrEMBL	A0A452ZKC3	Homeobox protein HOX1A OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg1136, jg15233
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26514, gene_2937
Amaranthaceae	Atriplex hortensis	2	Ah000467, Ah019240
Amaranthaceae	Beta vulgaris	2	BVRB_3g054330, BVRB_5g118590
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg30667, Sbi_jg38063, Sbi_jg58607, Sbi_jg6193
Amaranthaceae	Salicornia europaea	2	Seu_jg15648, Seu_jg28469
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006237, GOSA_00014842
Amaranthaceae	Suaeda glauca	4	Sgl00692, Sgl05708, Sgl55094, Sgl83349
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000004329, gene:ENSEOMG00000020670 ... gene:ENSEOMG00000023165, gene:ENSEOMG00000030203, gene:ENSEOMG00000032489, gene:ENSEOMG00000046117
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0000420, CQ.Regalona.r1.3BG0000340 ... CQ.Regalona.r1.5AG0024100, CQ.Regalona.r1.5BG0025560, CQ.Regalona.r1.9AG0006810
Anacardiaceae	Pistacia vera	2	pistato.v30104070, pistato.v30262780
Apiaceae	Apium graveolens	3	Ag10G02722, Ag1G00855, Ag6G02642
Arecaceae	Cocos nucifera	3	COCNU_02G019350, COCNU_06G017180, COCNU_11G013320
Arecaceae	Phoenix dactylifera	3	gene-LOC103700823, gene-LOC103713091, gene-LOC103722616
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.627.V1.1, AsparagusV1_03.2139.V1.1 ... AsparagusV1_07.2991.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G12011, Ftri14G23825, Ftri7G10563
Brassicaceae	Arabidopsis thaliana	3	AT3G19510.1, AT3G19530.1, AT4G29940.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10022305m.g.v1.0, Thhalv10024489m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g17570.v2.2, Sp7g27750.v2.2
Brassicaceae	Brassica nigra	4	BniB01g044670.2N, BniB03g011150.2N, BniB05g007710.2N ... BniB07g051220.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2006, Ceq09G0316
Casuarinaceae	Casuarina glauca	2	Cgl04G2193, Cgl09G0350
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g03990, gene.Cymno18g00850
Dunaliellaceae	Dunaliella salina	1	Dusal.2002s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g11050
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-12, nbisL1-mrna-5669
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.529, evm.TU.LG08.559
Plantaginaceae	Plantago ovata	3	Pov_00007718, Pov_00012209, Pov_00039460
Plumbaginaceae	Limonium bicolor	1	Lb2G13563
Poaceae	Echinochloa crus-galli	9	AH02.3171, AH05.1708, AH07.365, BH02.3716, BH05.1860 ... BH07.471, CH02.3258, CH03.4458, CH05.1954
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0101530, gene-QOZ80_2BG0154910 ... gene-QOZ80_5AG0366390, gene-QOZ80_5BG0414160
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0077220.1, HORVU.MOREX.r3.3HG0288670.1 ... HORVU.MOREX.r3.6HG0559000.1
Poaceae	Lolium multiflorum	2	gene-QYE76_020373, gene-QYE76_055280
Poaceae	Oryza coarctata	5	Oco03G002410, Oco04G002330, Oco09G014400, Oco11G005900 ... Oco22G005300
Poaceae	Oryza sativa	2	LOC_Os02g05450.1, LOC_Os06g12400.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G486900, gene-BS78_04G036900 ... gene-BS78_09G205000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0202763, Pt_Chr0504143, Pt_Chr0504147, Pt_Chr0602209
Poaceae	Sporobolus alterniflorus	12	Chr01G016960, Chr02G009830, Chr03G016020, Chr05G023640 ... Chr06G034980, Chr08G016090, Chr0G012210, Chr12G019780, Chr15G026280, Chr18G005260, Chr18G013950, Chr22G003610
Poaceae	Thinopyrum elongatum	4	Tel1E01G563400, Tel3E01G002400, Tel3E01G450300 ... Tel6E01G281100
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG050040, gene_TRIDC1BG056900 ... gene_TRIDC3AG040620, gene_TRIDC3BG045780, gene_TRIDC6AG015580, gene_TRIDC6BG021410
Poaceae	Triticum aestivum	9	TraesCS1A02G338900.2, TraesCS1B02G351300.2 ... TraesCS1D02G341000.2, TraesCS3A02G273300.1, TraesCS3B02G307000.1, TraesCS3D02G272700.1, TraesCS6A02G117600.1, TraesCS6B02G145900.1, TraesCS6D02G107700.1
Poaceae	Zea mays	8	Zm00001eb153100_P001, Zm00001eb232240_P001 ... Zm00001eb235090_P001, Zm00001eb293840_P001, Zm00001eb293860_P001, Zm00001eb293870_P001, Zm00001eb353320_P001, Zm00001eb371020_P003
Poaceae	Zoysia japonica	2	nbis-gene-25131, nbis-gene-33741
Poaceae	Zoysia macrostachya	3	Zma_g11128, Zma_g12189, Zma_g28601
Portulacaceae	Portulaca oleracea	3	evm.TU.LG02.1437, evm.TU.LG09.483, evm.TU.LG11.1313
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g20500, gene.Posoc07g13040
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_10_RagTag.1141, evm.TU.Scaffold_2_RagTag.382 ... evm.TU.Scaffold_10_RagTag.296, evm.TU.Scaffold_1_RagTag.2050, evm.TU.Scaffold_4_RagTag.2041
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-25468, nbisL1-mrna-4816, nbisL1-mrna-5858
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10234, nbisL1-mrna-14267, nbisL1-mrna-3692 ... nbisL1-mrna-7829
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16711, nbisL1-mrna-3482, nbisL1-mrna-4807 ... nbisL1-mrna-9769
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000008l.1188, evm.TU.utg000009l.733 ... evm.TU.utg000016l.233, evm.TU.utg000033l.196
Rhizophoraceae	Kandelia obovata	4	Maker00001403, Maker00005599, Maker00015145, Maker00016288
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-14259, nbisL1-mrna-16571, nbisL1-mrna-2532 ... nbisL1-mrna-4794
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-13992, nbisL1-mrna-14678, nbisL1-mrna-20965 ... nbisL1-mrna-6020
Salicaceae	Populus euphratica	5	populus_peu01564, populus_peu05834, populus_peu11201 ... populus_peu36258, populus_peu36259
Solanaceae	Lycium barbarum	2	gene-LOC132598971, gene-LOC132603227
Solanaceae	Solanum chilense	2	SOLCI004606800, SOLCI006657500
Solanaceae	Solanum pennellii	2	gene-LOC107008023, gene-LOC107024377
Tamaricaceae	Reaumuria soongarica	2	MSTRG.14104_chr08_-, STRG.11538_chr02_-
Tamaricaceae	Tamarix chinensis	2	TC10G0373, TC12G0432
Zosteraceae	Zostera marina	1	Zosma05g23900.v3.1