Basic Information
Locus ID:
Pt_Chr0503983
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 131033471 | 131038072 | + | Pt_Chr0503983 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 106,747.39 Da | 33.37 | 99.59 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 687 | 964 | 8.58934E-89 | - |
| Pfam | PF13855 | Leucine rich repeat | 489 | 548 | 4.4E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 69 | 103 | 2.3E-9 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 682 | 959 | 6.4E-44 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 131 | 193 | 1.4E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 207 | 265 | 4.5E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 277 | 336 | 1.6E-7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 677 | 965 | 1.89E-69 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 112 | 433 | 5.49E-53 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 356 | 579 | 2.82E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 338 | 606 | 5.6E-60 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 667 | 764 | 5.9E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 68 | 337 | 6.0E-75 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 765 | 972 | 2.0E-55 | - |
| SMART | SM00369 | LRR_typ_2 | 323 | 347 | 21.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 681 | 966 | 3.9E-28 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 228 | 252 | 62.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 181 | 203 | 400.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 510 | 534 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 535 | 558 | 58.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 130 | 149 | 220.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 512 | 534 | 7.457832 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 681 | 966 | 36.173866 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 813 | 825 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 535 | 548 | 7.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 513 | 526 | 7.6E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_039806376.1 | LRR receptor-like serine/threonine-protein kinase HSL2 [Panicum virgatum] | 0 |
| O49545 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0TBH0 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_4NG061843 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503983, Pt_Chr0504071 |