Basic Information
Locus ID:
Pt_Chr0503699
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 124360997 | 124370012 | - | Pt_Chr0503699 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 142,631.94 Da | 55.26 | 71.73 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1139 | 1182 | 1.57728E-17 | - |
| CDD | cd12108 | Hr-like | 64 | 191 | 1.25634E-31 | - |
| CDD | cd12108 | Hr-like | 669 | 828 | 7.75035E-28 | - |
| CDD | cd12108 | Hr-like | 320 | 448 | 6.10708E-11 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 318 | 449 | 3.0E-6 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1139 | 1181 | 7.2E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 1011 | 1086 | 1.5E-17 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 67 | 193 | 1.8E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 667 | 829 | 1.8E-8 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1187 | 1244 | 1.7E-22 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1138 | 1186 | 1.15E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1077 | 1132 | 1.83E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1002 | 1068 | 1.96E-18 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 664 | 885 | 1.9E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1133 | 1184 | 5.3E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 59 | 211 | 3.6E-33 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 323 | 466 | 5.1E-19 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1210 | 1250 | 1.2E-16 | - |
| SMART | SM00184 | ring_2 | 1140 | 1181 | 1.1E-4 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1004 | 1073 | 25.963966 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1076 | 1139 | 30.178036 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1140 | 1182 | 11.043484 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 898 | 923 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_051210186.1 | zinc finger protein BRUTUS-like [Lolium perenne] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5Y6M9 | Zinc finger protein BRUTUS OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology