Basic Information
Locus ID:
Pt_Chr0503483
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 117835651 | 117837222 | - | Pt_Chr0503483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 39,044.05 Da | 61.92 | 50.23 | -0.93 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 71 | 115 | 2.70301E-29 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 72 | 113 | 2.6E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 70 | 126 | 4.78E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 54 | 127 | 4.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 73 | 113 | 1.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 73 | 114 | 13.861307 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 88 | 97 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 352 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047094034.1 | uncharacterized protein LOC124706415 [Lolium rigidum] | 0 |
| O64425 | E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A452YRE9 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2747, BH01.3079 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0118630, gene-QOZ80_2BG0172380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0053920.2.CDS3 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012989 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G270100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503437, Pt_Chr0503483 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G021590, Chr09G006510, Chr13G018190, Chr15G017590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G342200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG030050, gene_TRIDC1BG035550 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G198000.1, TraesCS1B02G212700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb025340_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39354 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13020 |