Basic Information
Locus ID:
Pt_Chr0503393
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 115419261 | 115420070 | - | Pt_Chr0503393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 26,736.45 Da | 50.93 | 80.29 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 170 | 232 | 2.45417E-20 | IPR002048 |
| CDD | cd00051 | EFh | 94 | 156 | 5.20415E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 168 | 231 | 1.5E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 93 | 155 | 4.1E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 78 | 232 | 1.9E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 160 | 236 | 1.4E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 65 | 159 | 3.8E-20 | - |
| SMART | SM00054 | efh_1 | 130 | 158 | 0.039 | IPR002048 |
| SMART | SM00054 | efh_1 | 206 | 234 | 1.5E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 170 | 198 | 1.6E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 94 | 122 | 0.031 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 90 | 125 | 13.397589 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 126 | 161 | 10.384886 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 166 | 201 | 14.736568 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 202 | 237 | 13.564962 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 179 | 191 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 103 | 115 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 139 | 151 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 215 | 227 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 50 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_044959820.1 | probable calcium-binding protein CML11, partial [Hordeum vulgare subsp. vulgare] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6WIN9 | Calcium-binding protein CML11 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology