Basic Information
Locus ID:
Pt_Chr0503386
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 115308712 | 115309281 | + | Pt_Chr0503386 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.26 | 20,720.59 Da | 44.99 | 82.28 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 42 | 104 | 8.19623E-14 | IPR002048 |
| CDD | cd00051 | EFh | 118 | 180 | 6.76188E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 116 | 179 | 1.1E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 41 | 103 | 2.0E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 26 | 180 | 9.94E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 108 | 185 | 8.2E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 12 | 107 | 1.6E-20 | - |
| SMART | SM00054 | efh_1 | 78 | 106 | 0.039 | IPR002048 |
| SMART | SM00054 | efh_1 | 42 | 70 | 0.015 | IPR002048 |
| SMART | SM00054 | efh_1 | 118 | 146 | 1.6E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 154 | 182 | 1.3E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 74 | 109 | 10.384886 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 38 | 73 | 13.537066 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 150 | 185 | 13.760229 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 114 | 149 | 14.736568 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 127 | 139 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 51 | 63 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 163 | 175 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 87 | 99 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_044959820.1 | probable calcium-binding protein CML11, partial [Hordeum vulgare subsp. vulgare] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6WIN9 | Calcium-binding protein CML11 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology