Basic Information
Locus ID:
Pt_Chr0503378
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
bHLH-MYC and R2R3-MYB transcription factors N-terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 115055900 | 115058029 | + | Pt_Chr0503378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 76,740.90 Da | 58.78 | 66.16 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 524 | 600 | 2.08145E-44 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 51 | 232 | 2.4E-48 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 531 | 576 | 1.5E-10 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 530 | 601 | 9.68E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 519 | 604 | 2.7E-17 | IPR036638 |
| SMART | SM00353 | finulus | 533 | 582 | 9.5E-15 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 527 | 576 | 17.389959 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 617 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 487 | - | - |
| Coils | Coil | Coil | 573 | 600 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_037410293.1 | transcription factor MYC2-like [Triticum dicoccoides] | 0 |
| Q336P5 | Transcription factor MYC2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5YWT4 | BHLH domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology