Basic Information
Locus ID:
Pt_Chr0503285
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 112389435 | 112425521 | - | Pt_Chr0503285 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 463,365.50 Da | 44.59 | 86.75 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 74 | 179 | 7.7E-30 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4026 | 4112 | 2.7E-7 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 205 | 410 | 8.6E-47 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1943 | 2084 | 5.9E-12 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3137 | 3298 | 2.5E-10 | IPR009543 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 592 | 805 | 9.5E-33 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2160 | 2306 | 2.1E-7 | IPR009291 |
| Pfam | PF00169 | PH domain | 828 | 936 | 1.3E-5 | IPR001849 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2595 | 2662 | 1.87E-5 | IPR035892 |
| SUPERFAMILY | SSF50729 | PH domain-like | 842 | 939 | 1.94E-7 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 824 | 940 | 3.1E-5 | IPR011993 |
| ProSiteProfiles | PS50003 | PH domain profile. | 825 | 937 | 7.1498 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3925 | 3947 | - | - |
| Coils | Coil | Coil | 183 | 203 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_047093895.1 | uncharacterized protein LOC124706285 [Lolium rigidum] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5YXV7 | PH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology