Basic Information
Locus ID:
Pt_Chr0503243
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 111206424 | 111239123 | - | Pt_Chr0503243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 457,453.75 Da | 45.09 | 86.73 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2111 | 2257 | 2.1E-7 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1894 | 2035 | 5.8E-12 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 3977 | 4063 | 2.6E-7 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3088 | 3249 | 2.4E-10 | IPR009543 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 221 | 413 | 1.4E-41 | IPR031646 |
| Pfam | PF00169 | PH domain | 779 | 887 | 1.3E-5 | IPR001849 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 551 | 756 | 2.9E-25 | IPR031642 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 90 | 196 | 6.5E-30 | IPR026854 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2546 | 2613 | 1.87E-5 | IPR035892 |
| SUPERFAMILY | SSF50729 | PH domain-like | 793 | 890 | 1.91E-7 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 775 | 897 | 2.2E-5 | IPR011993 |
| ProSiteProfiles | PS50003 | PH domain profile. | 776 | 888 | 7.1498 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3875 | 3898 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 35 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_047093895.1 | uncharacterized protein LOC124706285 [Lolium rigidum] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5YXV7 | PH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology