Basic Information
Locus ID:
Pt_Chr0503117
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 107205426 | 107211495 | + | Pt_Chr0503117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.30 | 87,244.43 Da | 51.02 | 79.43 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 711 | 752 | 7.52046E-23 | - |
| CDD | cd01989 | STK_N | 40 | 198 | 5.20925E-43 | - |
| Pfam | PF04564 | U-box domain | 708 | 778 | 1.9E-16 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 429 | 646 | 2.0E-36 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 412 | 679 | 3.51E-61 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 707 | 778 | 3.27E-22 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 59 | 170 | 1.42E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 706 | 780 | 1.1E-26 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 36 | 165 | 1.0E-7 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 501 | 696 | 1.9E-40 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 409 | 500 | 2.4E-30 | - |
| SMART | SM00220 | serkin_6 | 428 | 682 | 3.1E-22 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 710 | 773 | 4.5E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 706 | 780 | 31.748983 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 428 | 683 | 30.944286 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 434 | 455 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 25 | - | - |
| Coils | Coil | Coil | 377 | 404 | - | - |
| Coils | Coil | Coil | 317 | 372 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_051195211.1 | U-box domain-containing protein 33-like [Lolium perenne] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | F2DZ47 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology