Basic Information
Locus ID:
Pt_Chr0503089
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 106238162 | 106243776 | - | Pt_Chr0503089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 42,341.35 Da | 36.57 | 110.27 | 0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 11 | 388 | 4.77456E-43 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 12 | 204 | 9.4E-16 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 13 | 389 | 2.49E-33 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 6 | 392 | 1.3E-35 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 193 | 9.399557 | IPR020846 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 144 | 166 | 2.8E-7 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 17 | 33 | 2.8E-7 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 334 | 357 | 2.8E-7 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_051194551.1 | uncharacterized protein LOC127307803 isoform X2 [Lolium perenne] | 0 |
| TrEMBL | M8BQX9 | Hippocampus abundant transcript 1 protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology