Basic Information
Locus ID:
Pt_Chr0503012
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 103408632 | 103413526 | - | Pt_Chr0503012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 53,537.21 Da | 49.08 | 82.65 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 190 | 263 | 3.0E-11 | IPR020683 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 3.7E-16 | - |
| Pfam | PF00023 | Ankyrin repeat | 112 | 132 | 0.01 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 264 | 3.45E-49 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 304 | 365 | 1.71E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 292 | 373 | 1.1E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 150 | 2.3E-33 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 152 | 265 | 1.1E-19 | IPR036770 |
| SMART | SM00248 | ANK_2a | 185 | 209 | 10.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 210 | 242 | 7.7E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 0.97 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.0016 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 3.5E-6 | IPR002110 |
| SMART | SM00184 | ring_2 | 309 | 358 | 0.0023 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.920248 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.118069 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.81647 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 15.0399 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 185 | 210 | 11.06011 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 309 | 359 | 9.966515 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 185 | 210 | 11.028328 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 210 | 236 | 10.95327 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 210 | 236 | 10.922203 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 324 | 333 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 463 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_047093671.1 | probable E3 ubiquitin-protein ligase XBOS33 [Lolium rigidum] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5YXK7 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology